IL_8BRM_031

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_031 not in the Motif Atlas

Homologous match to IL_8C3A_042

Geometric discrepancy: 0.2882

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8BRM|1|Lt|G|712
8BRM|1|Lt|A|713
*
8BRM|1|Lt|U|763
8BRM|1|Lt|C|764
8BRM|1|Lt|C|765

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LE

5S ribosomal RNA; 5S rRNA

Chain LF

Ribosomal protein L5

Chain LK

Ribosomal protein L10

Chain LU

Ribosomal protein L21