IL_8BRM_040

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8BRM|1|Lt|C|908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_040 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.2039

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8BRM|1|Lt|G|907
8BRM|1|Lt|C|908
8BRM|1|Lt|G|909
*
8BRM|1|Lt|C|996
8BRM|1|Lt|C|997

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LE

5S ribosomal RNA; 5S rRNA

Chain LJ

Ribosomal protein L6

Chain LT

Ribosomal protein L18a

Chain Ls

Ubiquitin/Ribosomal protein L40e