IL_8BRM_042

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCCGG*CG

Length

7 nucleotides

Bulged bases

8BRM|1|Lt|C|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_042 not in the Motif Atlas

Homologous match to IL_8C3A_062

Geometric discrepancy: 0.579

The information below is about IL_8C3A_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8BRM|1|Lt|C|1072
8BRM|1|Lt|C|1073
8BRM|1|Lt|C|1074
8BRM|1|Lt|G|1075
8BRM|1|Lt|G|1076
*
8BRM|1|Lt|C|1108
8BRM|1|Lt|G|1109

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LC

Ribosomal protein L4

Chain LD

5.8S rRNA

Chain Lf

Ribosomal protein L32