IL_8BRM_043
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGGCGAAG*CGGAC
- Length
- 13 nucleotides
- Bulged bases
- 8BRM|1|Lt|C|1080
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BRM_043 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1774
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8BRM|1|Lt|G|1077
8BRM|1|Lt|G|1078
8BRM|1|Lt|G|1079
8BRM|1|Lt|C|1080
8BRM|1|Lt|G|1081
8BRM|1|Lt|A|1082
8BRM|1|Lt|A|1083
8BRM|1|Lt|G|1084
*
8BRM|1|Lt|C|1103
8BRM|1|Lt|G|1104
8BRM|1|Lt|G|1105
8BRM|1|Lt|A|1106
8BRM|1|Lt|C|1107
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LC
- Ribosomal protein L4
- Chain LD
- 5.8S rRNA
- Chain LZ
- Ribosomal protein L26
- Chain Lf
- Ribosomal protein L32
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