IL_8BRM_055

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCGAAC*GCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_055 not in the Motif Atlas

Geometric match to IL_5J7L_304

Geometric discrepancy: 0.1177

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8BRM|1|Lt|G|1515
8BRM|1|Lt|C|1516
8BRM|1|Lt|G|1517
8BRM|1|Lt|A|1518
8BRM|1|Lt|A|1519
8BRM|1|Lt|C|1520
*
8BRM|1|Lt|G|1835
8BRM|1|Lt|C|1836
8BRM|1|Lt|C|1837

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LQ

Ribosomal protein L17

Chain Le

Ribosomal protein L31B