IL_8BRM_061

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CG*CGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_061 not in the Motif Atlas

Homologous match to IL_8C3A_086

Geometric discrepancy: 0.4217

The information below is about IL_8C3A_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74125.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8BRM|1|Lt|C|1579
8BRM|1|Lt|G|1580
*
8BRM|1|Lt|C|1587
8BRM|1|Lt|G|1588
8BRM|1|Lt|G|1589
8BRM|1|Lt|G|1590

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19