IL_8BRM_070

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_070 not in the Motif Atlas

Geometric match to IL_5TBW_089

Geometric discrepancy: 0.1146

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8BRM|1|Lt|G|1764
8BRM|1|Lt|C|1765
*
8BRM|1|Lt|G|1795
8BRM|1|Lt|C|1796
8BRM|1|Lt|A|1797
8BRM|1|Lt|U|1798

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lo

Ribosomal protein L41