IL_8BRM_076

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

8BRM|1|Lt|G|2030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_076 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.2244

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8BRM|1|Lt|C|1911
8BRM|1|Lt|A|1912
8BRM|1|Lt|G|1913
*
8BRM|1|Lt|C|2028
8BRM|1|Lt|G|2029
8BRM|1|Lt|G|2030
8BRM|1|Lt|G|2031

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain LO

Ribosomal protein L15

Chain Lp

Ribosomal protein L44