IL_8BRM_081

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_081 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.1976

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8BRM|1|Lt|G|2193
8BRM|1|Lt|C|2194
8BRM|1|Lt|C|2195
*
8BRM|1|Lt|G|2211
8BRM|1|Lt|C|2212

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LM

Ribosomal protein L13

Chain LR

Ribosomal protein L18

Chain Lb

Ribosomal protein L27a

Chain Lp

Ribosomal protein L44