IL_8BRM_089

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UC*GAAG

Length

6 nucleotides

Bulged bases

8BRM|1|Lt|A|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_089 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.3217

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8BRM|1|Lt|U|2314
8BRM|1|Lt|C|2315
*
8BRM|1|Lt|G|2332
8BRM|1|Lt|A|2333
8BRM|1|Lt|A|2334
8BRM|1|Lt|G|2335

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LJ

Ribosomal protein L6

Chain LP

Ribosomal protein L13a