IL_8BRM_097

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UU*AGCG

Length

6 nucleotides

Bulged bases

8BRM|1|Lt|G|2495, 8BRM|1|Lt|C|2496

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_097 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2616

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8BRM|1|Lt|U|2480
8BRM|1|Lt|U|2481
*
8BRM|1|Lt|A|2494
8BRM|1|Lt|G|2495
8BRM|1|Lt|C|2496
8BRM|1|Lt|G|2497

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19

Chain Le

Ribosomal protein L31B