IL_8BRM_098

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCCCUG*CGCACC

Length

12 nucleotides

Bulged bases

8BRM|1|Lt|A|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_098 not in the Motif Atlas

Geometric match to IL_7RQB_107

Geometric discrepancy: 0.237

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8BRM|1|Lt|G|2518
8BRM|1|Lt|C|2519
8BRM|1|Lt|C|2520
8BRM|1|Lt|C|2521
8BRM|1|Lt|U|2522
8BRM|1|Lt|G|2523
*
8BRM|1|Lt|C|2543
8BRM|1|Lt|G|2544
8BRM|1|Lt|C|2545
8BRM|1|Lt|A|2546
8BRM|1|Lt|C|2547
8BRM|1|Lt|C|2548

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LJ

Ribosomal protein L6

Chain LP

Ribosomal protein L13a

Chain Ls

Ubiquitin/Ribosomal protein L40e