IL_8BRM_105

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GACGAAG*CGC

Length

10 nucleotides

Bulged bases

8BRM|1|St|G|44, 8BRM|1|St|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_105 not in the Motif Atlas

Homologous match to IL_8C3A_395

Geometric discrepancy: 0.1726

The information below is about IL_8C3A_395

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80458.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8BRM|1|St|G|41
8BRM|1|St|A|42
8BRM|1|St|C|43
8BRM|1|St|G|44
8BRM|1|St|A|45
8BRM|1|St|A|46
8BRM|1|St|G|47
*
8BRM|1|St|C|344
8BRM|1|St|G|345
8BRM|1|St|C|346

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SI

Ribosomal protein S8

Chain SO

Ribosomal protein S23