IL_8BRM_107

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_107 not in the Motif Atlas

Geometric match to IL_4V9F_082

Geometric discrepancy: 0.2126

The information below is about IL_4V9F_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

8BRM|1|St|C|58
8BRM|1|St|C|59
8BRM|1|St|G|60
*
8BRM|1|St|C|74
8BRM|1|St|G|75

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SG

Ribosomal protein S6

Chain Sb

Ribosomal protein S24