IL_8BRM_128

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GAGGAAACG*CCCGCCGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|St|G|530
8BRM|1|St|A|531
8BRM|1|St|G|532
8BRM|1|St|G|533
8BRM|1|St|A|534
8BRM|1|St|A|535
8BRM|1|St|A|536
8BRM|1|St|C|537
8BRM|1|St|G|538
*
8BRM|1|St|C|565
8BRM|1|St|C|566
8BRM|1|St|C|567
8BRM|1|St|G|568
8BRM|1|St|C|569
8BRM|1|St|C|570
8BRM|1|St|G|571
8BRM|1|St|C|572

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

Ribosomal protein S4

Chain SK

Ribosomal protein S9

Chain SM

Ribosomal protein S11