IL_8BRM_129

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGAG*CAGGCCCGUUGGC

Length

17 nucleotides

Bulged bases

8BRM|1|St|C|556, 8BRM|1|St|C|558, 8BRM|1|St|G|559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|St|G|539
8BRM|1|St|G|540
8BRM|1|St|A|541
8BRM|1|St|G|542
*
8BRM|1|St|C|552
8BRM|1|St|A|553
8BRM|1|St|G|554
8BRM|1|St|G|555
8BRM|1|St|C|556
8BRM|1|St|C|557
8BRM|1|St|C|558
8BRM|1|St|G|559
8BRM|1|St|U|560
8BRM|1|St|U|561
8BRM|1|St|G|562
8BRM|1|St|G|563
8BRM|1|St|C|564

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

Ribosomal protein S4

Chain SK

Ribosomal protein S9

Chain Sb

Ribosomal protein S24