IL_8BRM_133

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

8BRM|1|St|C|713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_133 not in the Motif Atlas

Geometric match to IL_1S03_006

Geometric discrepancy: 0.2306

The information below is about IL_1S03_006

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

8BRM|1|St|A|622
8BRM|1|St|G|623
*
8BRM|1|St|C|712
8BRM|1|St|C|713
8BRM|1|St|U|714

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SJ

Ribosomal protein S15A

Chain SP

Ribosomal protein S13

Chain Se

Ribosomal protein S27