IL_8BRM_144

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

8BRM|1|St|U|810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_144 not in the Motif Atlas

Geometric match to IL_4V9F_029

Geometric discrepancy: 0.2771

The information below is about IL_4V9F_029

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8BRM|1|St|G|805
8BRM|1|St|C|806
*
8BRM|1|St|G|809
8BRM|1|St|U|810
8BRM|1|St|C|811

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SA

Ribosomal protein SA

Chain SD

Ribosomal protein S3a

Chain Se

Ribosomal protein S27