IL_8BRM_146

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8BRM|1|St|A|1319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_146 not in the Motif Atlas

Homologous match to IL_4V88_441

Geometric discrepancy: 0.146

The information below is about IL_4V88_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8BRM|1|St|G|890
8BRM|1|St|A|891
*
8BRM|1|St|U|1318
8BRM|1|St|A|1319
8BRM|1|St|C|1320

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SB

Ribosomal protein S2

Chain Sd

Ribosomal protein S26