IL_8BRM_155

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8BRM|1|St|U|1011

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_155 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.1556

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8BRM|1|St|G|1010
8BRM|1|St|U|1011
8BRM|1|St|G|1012
*
8BRM|1|St|C|1146
8BRM|1|St|C|1147

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Sh

Ribosomal protein S29A