IL_8BRM_162

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCCAGCC*GAGCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|St|G|1186
8BRM|1|St|C|1187
8BRM|1|St|C|1188
8BRM|1|St|A|1189
8BRM|1|St|G|1190
8BRM|1|St|C|1191
8BRM|1|St|C|1192
*
8BRM|1|St|G|1213
8BRM|1|St|A|1214
8BRM|1|St|G|1215
8BRM|1|St|C|1216
8BRM|1|St|C|1217

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SC

Ribosomal protein S3

Chain SF

Ribosomal protein S5

Chain ST

Ribosomal protein S16

Chain SW

Ribosomal protein S19e

Chain SX

Ribosomal protein S20

Chain Sc

Ribosomal protein S25

Chain Sh

Ribosomal protein S29A