IL_8BRM_164

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_164 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1541

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8BRM|1|St|G|1196
8BRM|1|St|C|1197
8BRM|1|St|C|1198
*
8BRM|1|St|G|1205
8BRM|1|St|A|1206
8BRM|1|St|C|1207

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SR

Ribosomal protein S15

Chain SW

Ribosomal protein S19e