IL_8BRM_165

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGGACC*GCGCAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_165 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.219

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BRM|1|St|G|1230
8BRM|1|St|G|1231
8BRM|1|St|G|1232
8BRM|1|St|A|1233
8BRM|1|St|C|1234
8BRM|1|St|C|1235
*
8BRM|1|St|G|1254
8BRM|1|St|C|1255
8BRM|1|St|G|1256
8BRM|1|St|C|1257
8BRM|1|St|A|1258
8BRM|1|St|C|1259

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SF

Ribosomal protein S5

Chain SV

Ribosomal protein S18

Chain SW

Ribosomal protein S19e