IL_8BRM_171

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGCU*AGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|St|C|1332
8BRM|1|St|G|1333
8BRM|1|St|C|1334
8BRM|1|St|U|1335
*
8BRM|1|St|A|1408
8BRM|1|St|G|1409
8BRM|1|St|A|1410
8BRM|1|St|A|1411
8BRM|1|St|G|1412

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Lo

Ribosomal protein L41

Chain Lt

Large subunit ribosomal RNA; LSU rRNA

Chain SO

Ribosomal protein S23