IL_8BRM_172

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_172 not in the Motif Atlas

Homologous match to IL_4V88_467

Geometric discrepancy: 0.2531

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8BRM|1|St|U|1338
8BRM|1|St|A|1339
8BRM|1|St|C|1340
*
8BRM|1|St|G|1403
8BRM|1|St|A|1404
8BRM|1|St|A|1405

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Lo

Ribosomal protein L41

Chain Lt

Large subunit ribosomal RNA; LSU rRNA

Chain SO

Ribosomal protein S23