IL_8BRM_177

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_177 not in the Motif Atlas

Geometric match to IL_1UN6_005

Geometric discrepancy: 0.1662

The information below is about IL_1UN6_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8BRM|1|St|G|1362
8BRM|1|St|C|1363
8BRM|1|St|C|1364
*
8BRM|1|St|G|1380
8BRM|1|St|C|1381
8BRM|1|St|C|1382

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain LX

Ribosomal protein L24

Chain Lt

Large subunit ribosomal RNA; LSU rRNA

Chain SG

Ribosomal protein S6

Chain SI

Ribosomal protein S8