IL_8BRM_178

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCGAAAG*CUGGUAGCUG

Length

17 nucleotides

Bulged bases

8BRM|1|Lt|G|650, 8BRM|1|Lt|G|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|Lt|C|520
8BRM|1|Lt|C|521
8BRM|1|Lt|G|522
8BRM|1|Lt|A|523
8BRM|1|Lt|A|524
8BRM|1|Lt|A|525
8BRM|1|Lt|G|526
*
8BRM|1|Lt|C|648
8BRM|1|Lt|U|649
8BRM|1|Lt|G|650
8BRM|1|Lt|G|651
8BRM|1|Lt|U|652
8BRM|1|Lt|A|653
8BRM|1|Lt|G|654
8BRM|1|Lt|C|655
8BRM|1|Lt|U|656
8BRM|1|Lt|G|657

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LC

Ribosomal protein L4

Chain LM

Ribosomal protein L13

Chain LO

Ribosomal protein L15

Chain Lb

Ribosomal protein L27a

Chain Lk

Ribosomal protein L37