IL_8BRM_181

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGGUU*ACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_181 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2455

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

8BRM|1|Lt|G|1175
8BRM|1|Lt|G|1176
8BRM|1|Lt|G|1177
8BRM|1|Lt|U|1178
8BRM|1|Lt|U|1179
*
8BRM|1|Lt|A|1470
8BRM|1|Lt|C|1471
8BRM|1|Lt|C|1472

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LG

Ribosomal protein L39

Chain LY

Ribosomal protein L23A

Chain Lk

Ribosomal protein L37