IL_8BRM_187

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCGGUCCCUGCU*ACGGCC

Length

18 nucleotides

Bulged bases

8BRM|1|St|G|114, 8BRM|1|St|U|115, 8BRM|1|St|C|121, 8BRM|1|St|C|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|St|G|111
8BRM|1|St|C|112
8BRM|1|St|G|113
8BRM|1|St|G|114
8BRM|1|St|U|115
8BRM|1|St|C|116
8BRM|1|St|C|117
8BRM|1|St|C|118
8BRM|1|St|U|119
8BRM|1|St|G|120
8BRM|1|St|C|121
8BRM|1|St|U|122
*
8BRM|1|St|A|203
8BRM|1|St|C|204
8BRM|1|St|G|205
8BRM|1|St|G|206
8BRM|1|St|C|207
8BRM|1|St|C|208

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

Ribosomal protein S4

Chain SG

Ribosomal protein S6

Chain SI

Ribosomal protein S8