IL_8BRM_188

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCGCACGGGC*GACGCAGC

Length

18 nucleotides

Bulged bases

8BRM|1|St|C|161, 8BRM|1|St|C|163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|St|G|160
8BRM|1|St|C|161
8BRM|1|St|G|162
8BRM|1|St|C|163
8BRM|1|St|A|164
8BRM|1|St|C|165
8BRM|1|St|G|166
8BRM|1|St|G|167
8BRM|1|St|G|168
8BRM|1|St|C|169
*
8BRM|1|St|G|194
8BRM|1|St|A|195
8BRM|1|St|C|196
8BRM|1|St|G|197
8BRM|1|St|C|198
8BRM|1|St|A|199
8BRM|1|St|G|200
8BRM|1|St|C|201

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

Ribosomal protein S4

Chain SG

Ribosomal protein S6

Chain SI

Ribosomal protein S8