IL_8BTK_014

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGGAUAAC*GCUAA(OMU)A(OMC)A

Length

17 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|A2|U|144
8BTK|1|A2|G|145
8BTK|1|A2|G|146
8BTK|1|A2|A|147
8BTK|1|A2|U|148
8BTK|1|A2|A|149
8BTK|1|A2|A|150
8BTK|1|A2|C|151
*
8BTK|1|A2|G|167
8BTK|1|A2|C|168
8BTK|1|A2|U|169
8BTK|1|A2|A|170
8BTK|1|A2|A|171
8BTK|1|A2|OMU|172
8BTK|1|A2|A|173
8BTK|1|A2|OMC|174
8BTK|1|A2|A|175

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ax

40S ribosomal protein S24

Chain BW

Ribosomal protein L24