IL_8BTK_016

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAC*GGA(PSU)G

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_016 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3639

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8BTK|1|A2|C|188
8BTK|1|A2|U|189
8BTK|1|A2|G|190
8BTK|1|A2|A|191
8BTK|1|A2|C|192
*
8BTK|1|A2|G|207
8BTK|1|A2|G|208
8BTK|1|A2|A|209
8BTK|1|A2|PSU|210
8BTK|1|A2|G|211

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8