IL_8BTK_017

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CA(PSU)U*ACCUCGGG

Length

12 nucleotides

Bulged bases

8BTK|1|A2|U|306, 8BTK|1|A2|G|308

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|A2|C|216
8BTK|1|A2|A|217
8BTK|1|A2|PSU|218
8BTK|1|A2|U|219
*
8BTK|1|A2|A|303
8BTK|1|A2|C|304
8BTK|1|A2|C|305
8BTK|1|A2|U|306
8BTK|1|A2|C|307
8BTK|1|A2|G|308
8BTK|1|A2|G|309
8BTK|1|A2|G|310

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ah

40S ribosomal protein S8