IL_8BTK_024
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCCACUC*GGA(OMG)G
- Length
- 12 nucleotides
- Bulged bases
- 8BTK|1|A2|G|508
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_024 not in the Motif Atlas
- Geometric match to IL_4LFB_048
- Geometric discrepancy: 0.3604
- The information below is about IL_4LFB_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89862.1
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8BTK|1|A2|C|491
8BTK|1|A2|C|492
8BTK|1|A2|C|493
8BTK|1|A2|A|494
8BTK|1|A2|C|495
8BTK|1|A2|U|496
8BTK|1|A2|C|497
*
8BTK|1|A2|G|507
8BTK|1|A2|G|508
8BTK|1|A2|A|509
8BTK|1|A2|OMG|510
8BTK|1|A2|G|511
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- 40S ribosomal protein S4
- Chain Ai
- Ribosomal protein S9 (Predicted)
- Chain Ax
- 40S ribosomal protein S24
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