IL_8BTK_027

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAG*CGAGG(A2M)UC

Length

11 nucleotides

Bulged bases

8BTK|1|A2|G|589

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_027 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1111

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

8BTK|1|A2|G|564
8BTK|1|A2|A|565
8BTK|1|A2|G|566
*
8BTK|1|A2|C|586
8BTK|1|A2|G|587
8BTK|1|A2|A|588
8BTK|1|A2|G|589
8BTK|1|A2|G|590
8BTK|1|A2|A2M|591
8BTK|1|A2|U|592
8BTK|1|A2|C|593

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ai

Ribosomal protein S9 (Predicted)