IL_8BTK_049

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

8BTK|1|A2|U|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_049 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.0998

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8BTK|1|A2|G|925
8BTK|1|A2|G|926
8BTK|1|A2|A|927
8BTK|1|A2|C|928
*
8BTK|1|A2|G|1015
8BTK|1|A2|U|1016
8BTK|1|A2|U|1017
8BTK|1|A2|U|1018
8BTK|1|A2|U|1019

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S27

Chain Am

uS15