IL_8BTK_054
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGG(PSU)(PSU)C*GUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_054 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.3305
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8BTK|1|A2|A|1043
8BTK|1|A2|G|1044
8BTK|1|A2|G|1045
8BTK|1|A2|PSU|1046
8BTK|1|A2|PSU|1047
8BTK|1|A2|C|1048
*
8BTK|1|A2|G|1072
8BTK|1|A2|U|1073
8BTK|1|A2|U|1074
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AE
- eS26
- Chain An
- 40S ribosomal protein S14
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BA
- 60S ribosomal protein L8
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