IL_8BTK_056

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAC*GUCUUUGG

Length

12 nucleotides

Bulged bases

8BTK|1|A2|C|1154, 8BTK|1|A2|U|1156, 8BTK|1|A2|G|1158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|A2|C|1092
8BTK|1|A2|G|1093
8BTK|1|A2|A|1094
8BTK|1|A2|C|1095
*
8BTK|1|A2|G|1152
8BTK|1|A2|U|1153
8BTK|1|A2|C|1154
8BTK|1|A2|U|1155
8BTK|1|A2|U|1156
8BTK|1|A2|U|1157
8BTK|1|A2|G|1158
8BTK|1|A2|G|1159

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S27

Chain Ab

Ribosomal_S5_C domain-containing protein,40S ribosomal protein S2

Chain Ak

40S ribosomal protein S11

Chain Am

uS15

Chain Av

Ribosomal protein S15a

Chain Aw

40S ribosomal protein S23