IL_8BTK_063

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGA*U(PSU)G

Length

7 nucleotides

Bulged bases

8BTK|1|A2|G|1208

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_063 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.207

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8BTK|1|A2|C|1206
8BTK|1|A2|G|1207
8BTK|1|A2|G|1208
8BTK|1|A2|A|1209
*
8BTK|1|A2|U|1692
8BTK|1|A2|PSU|1693
8BTK|1|A2|G|1694

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

eS26

Chain AH

mRNA

Chain Ab

Ribosomal_S5_C domain-containing protein,40S ribosomal protein S2