IL_8BTK_078

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUGCUAA*U(PSU)A(OMG)AGG

Length

15 nucleotides

Bulged bases

8BTK|1|A2|U|1398

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|A2|C|1396
8BTK|1|A2|A|1397
8BTK|1|A2|U|1398
8BTK|1|A2|G|1399
8BTK|1|A2|C|1400
8BTK|1|A2|U|1401
8BTK|1|A2|A|1402
8BTK|1|A2|A|1403
*
8BTK|1|A2|U|1445
8BTK|1|A2|PSU|1446
8BTK|1|A2|A|1447
8BTK|1|A2|OMG|1448
8BTK|1|A2|A|1449
8BTK|1|A2|G|1450
8BTK|1|A2|G|1451

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AF

RACK1

Chain Ap

uS9

Chain Aq

40S ribosomal protein eS17

Chain At

40S ribosomal protein uS10