IL_8BTK_086
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGGAUCG*CAUGAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_086 not in the Motif Atlas
- Homologous match to IL_8C3A_469
- Geometric discrepancy: 0.111
- The information below is about IL_8C3A_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10092.1
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
8BTK|1|A2|G|1605
8BTK|1|A2|G|1606
8BTK|1|A2|G|1607
8BTK|1|A2|A|1608
8BTK|1|A2|U|1609
8BTK|1|A2|C|1610
8BTK|1|A2|G|1611
*
8BTK|1|A2|C|1630
8BTK|1|A2|A|1631
8BTK|1|A2|U|1632
8BTK|1|A2|G|1633
8BTK|1|A2|A|1634
8BTK|1|A2|A|1635
8BTK|1|A2|C|1636
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ae
- Ribosomal protein S5
- Chain Ar
- 40S ribosomal protein S18
- Chain As
- 40S ribosomal protein S19
- Chain Ay
- 40S ribosomal protein S25
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