IL_8BTK_102

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAU*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_102 not in the Motif Atlas

Homologous match to IL_4V90_066

Geometric discrepancy: 0.3185

The information below is about IL_4V90_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|AT|U|11
8BTK|1|AT|A|12
8BTK|1|AT|U|13
*
8BTK|1|AT|G|22
8BTK|1|AT|U|23
8BTK|1|AT|A|24

Current chains

Chain AT

P-site tRNA

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA