IL_8BTK_120

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUU*G(A2M)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_120 not in the Motif Atlas

Geometric match to IL_4V88_444

Geometric discrepancy: 0.1477

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8BTK|1|B5|C|390
8BTK|1|B5|U|391
8BTK|1|B5|U|392
*
8BTK|1|B5|G|399
8BTK|1|B5|A2M|400
8BTK|1|B5|G|401

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BP

uL22

Chain BY

Ribosomal protein L26

Chain SX

Protein transport protein Sec61 subunit alpha isoform 1