IL_8BTK_129

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

8BTK|1|B5|G|660, 8BTK|1|B5|A|661, 8BTK|1|B5|C|662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_129 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1845

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8BTK|1|B5|G|488
8BTK|1|B5|G|489
*
8BTK|1|B5|C|659
8BTK|1|B5|G|660
8BTK|1|B5|A|661
8BTK|1|B5|C|662
8BTK|1|B5|C|663

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BQ

eL18

Chain Br

60S ribosomal protein L28