IL_8BTK_134

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUC*GG

Length

6 nucleotides

Bulged bases

8BTK|1|B5|U|515, 8BTK|1|B5|U|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_134 not in the Motif Atlas

Geometric match to IL_5J7L_315

Geometric discrepancy: 0.2216

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8BTK|1|B5|U|514
8BTK|1|B5|U|515
8BTK|1|B5|U|516
8BTK|1|B5|C|517
*
8BTK|1|B5|G|640
8BTK|1|B5|G|641

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

L13