IL_8BTK_138

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

8BTK|1|B5|A|843, 8BTK|1|B5|A|844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_138 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2871

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8BTK|1|B5|A|717
8BTK|1|B5|C|718
*
8BTK|1|B5|G|842
8BTK|1|B5|A|843
8BTK|1|B5|A|844
8BTK|1|B5|U|845

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BF

uL30,60S ribosomal protein L7