IL_8BTK_148

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

8BTK|1|B5|C|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_148 not in the Motif Atlas

Geometric match to IL_3W3S_001

Geometric discrepancy: 0.2325

The information below is about IL_3W3S_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

8BTK|1|B5|C|1001
8BTK|1|B5|A|1002
*
8BTK|1|B5|U|1100
8BTK|1|B5|C|1101
8BTK|1|B5|G|1102

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

uL30,60S ribosomal protein L7