IL_8BTK_163

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

8BTK|1|B5|A|1605, 8BTK|1|B5|G|1609

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|B5|C|1475
8BTK|1|B5|C|1476
8BTK|1|B5|OMG|1477
8BTK|1|B5|A|1478
8BTK|1|B5|A2M|1479
8BTK|1|B5|A|1480
8BTK|1|B5|G|1481
*
8BTK|1|B5|C|1603
8BTK|1|B5|U|1604
8BTK|1|B5|A|1605
8BTK|1|B5|G|1606
8BTK|1|B5|U|1607
8BTK|1|B5|A|1608
8BTK|1|B5|G|1609
8BTK|1|B5|C|1610
8BTK|1|B5|U|1611
8BTK|1|B5|G|1612

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BL

L13

Chain BN

Ribosomal protein L15

Chain Ba

60S ribosomal protein L27a

Chain Bj

Ribosomal protein L37