IL_8BTK_166

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_166 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0916

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8BTK|1|B5|C|1506
8BTK|1|B5|G|1507
8BTK|1|B5|A|1508
8BTK|1|B5|A|1509
8BTK|1|B5|G|1510
*
8BTK|1|B5|U|1527
8BTK|1|B5|G|1528
8BTK|1|B5|G|1529
8BTK|1|B5|A|1530
8BTK|1|B5|G|1531

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

60S ribosomal protein L8

Chain BR

60S ribosomal protein L19

Chain Bp

eL43