IL_8BTK_172

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCGCAACCCCG*CG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|B5|C|1649
8BTK|1|B5|U|1650
8BTK|1|B5|C|1651
8BTK|1|B5|G|1652
8BTK|1|B5|C|1653
8BTK|1|B5|A|1654
8BTK|1|B5|A|1655
8BTK|1|B5|C|1656
8BTK|1|B5|C|1657
8BTK|1|B5|C|1658
8BTK|1|B5|C|1659
8BTK|1|B5|G|1660
*
8BTK|1|B5|C|1780
8BTK|1|B5|G|1781

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BF

uL30,60S ribosomal protein L7

Chain BQ

eL18

Chain BT

60S ribosomal protein L21

Chain Bb

60S ribosomal protein L29